PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004511915.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 330aa    MW: 36493.6 Da    PI: 5.8649
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004511915.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.95.8e-16105151455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  XP_004511915.1 105 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 151
                     6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.8E-1998161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-2098160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.38E-16104155No hitNo description
PfamPF000102.0E-13105151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGDNDNNNNN NNISSSQDEI SLFLHQILLR SSSSSSSSQP HNSMPLQDGN ISPLHFNLSS  60
SSLGGNDTDD YDCESEEGVE ALTEELPTKH VASRSSSKRS RAAEVHNLSE KRRRSRINEK  120
MKALQNLIPN SNKTDKASML DEAIEYLKQL QLQVQMLSLR NGLNLHPMCY PEGLQPLTLS  180
QMSMELCDGN RSTPLNMTST LPLPQENPLL YGSNLPNKTT LPSQPSMSYP SYINNTETSF  240
GVESRIPTQK RPLKRSSVPI HGEDMLQYQQ SNAIHSATNL IGGSQVVKEF ESGSTTANNS  300
LQTCIAVRDQ SEAIMRNSEP NIILTSQLSR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004511915.10.0PREDICTED: transcription factor ALC-like isoform X2
SwissprotQ9FUA45e-50SPT_ARATH; Transcription factor SPATULA
TrEMBLG7K6L51e-153G7K6L5_MEDTR; Helix loop helix DNA-binding domain protein
STRINGGLYMA11G05810.11e-122(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.16e-48bHLH family protein